Scaffold Ga0209645_1000406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1000406

Scaffold Ga0209645_1000406

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1000406 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22477
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065691	Metagenome	127	Y
F070649	Metagenome	123	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10004065	F089518	AGG	VEYVIHIKGKGGECFAYHSTREKSELDRLVKKYLAMKGITVEVKKRMLT
Ga0209645_10004067	F065691	AGAAG	VARRKRIEDIPLNIYIPEPITILLAVLSFLAGFLYRKHNDKEDIADAFDEGFEKGSKDVVKALSELTGRDIHIEMEREDMDR
Ga0209645_10004069	F070649	GAG	MQPKDQPTHIRIKYEPTQKQTQTECRLYGKDFINMAEAARYWGISHSWAVEQIRKGWNTESFPSKARKKYK

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