Scaffold Ga0209645_1000561

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1000561

Scaffold Ga0209645_1000561

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1000561 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19094
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (17.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011351	Metagenome	292	Y
F017932	Metagenome	238	Y
F077934	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100056110	F011351	GGAG	MELEKYIKQTAQLIIPTIDHIQLVEYKDKDLDFVYGMEEYHTSFKRMAKQLIRLLWR
Ga0209645_100056115	F077934	N/A	MHSKWGWYNTLYSLSDGNILNIDKITSLPILSVLTFLAFRQDYNNKQKNQYDHI
Ga0209645_100056124	F017932	GAGG	MKIKPTFFNTRHERLHWNYFDINNYMFTIFFKSGKNMSFILRDLKKNENIKNYIYNKLLTKYKNIVEIDISNISNIEYNLMKLENIPCVIKIC

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