Scaffold Ga0209645_1001582

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1001582

Scaffold Ga0209645_1001582

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1001582 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11267
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056968	Metagenome	137	N
F084169	Metagenome	112	Y
F090340	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100158221	F090340	GGAG	MKYKTIALRELGIDPADLRTALYCHWEMEKLEYHLDRMVSYMVENRLPHALTGLVIEDIEEARNELKEIFNDLYEMERGIDK
Ga0209645_10015828	F056968	AGAAG	MNKNFELVYKSLDTITPDWQTVLVATITENGFEYDIFNKMEEEHFQENLAVLLALVAKKSMQELEKIDWSDN
Ga0209645_10015829	F084169	AGG	MNGKGDRNRTTDWEKFYDGYNKVFRPKEPFYKDVQEYESRFRGGNIDSTQEETSEDVGANPTSSTIEKTPFKADPMNLYWSSTI

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