Scaffold Ga0209645_1001772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1001772

Scaffold Ga0209645_1001772

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1001772 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10612
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (81.48%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088866	Metagenome	109	N
F105362	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100177214	F088866	AGAAG	MSKQKQQGTKLETFVAKMLNGSRIAEGGKNDKGDVLFNWNGEKFYIECKARQSLNVTRELAKSIKKSKSQFTALVWKRLVKTDKSRRQPDGVPIVVCLTLDTFVEIVESKIGNDFFDDPFWKELP
Ga0209645_10017728	F105362	AGGAG	MSAPDPMDRDVRVMFTDNSTRDYIVTASNIKEAEEVFDLIFNHMEQSVNDLLKQYSVGKKTKVWVEYQLDKYNYMTEEDNDFLVSHIYDKEDND

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