Basic Information | |
---|---|
Taxon OID | 3300025151 Open in IMG/M |
Scaffold ID | Ga0209645_1004823 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5945 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008114 | Metagenome | 339 | Y |
F037990 | Metagenome | 167 | N |
F100996 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209645_10048231 | F100996 | AGGAG | MKELNEYQKLDWISFAIQEALNGNIGELEQALALVEDLRDNPWIQTHL |
Ga0209645_10048232 | F037990 | AGGAG | MKFDNPTARKIRDAMQEALDKANVNGVTIEVGNCTYSGGEATYKVQVLLDGAKSKEEQDLEQMAHLMGLDTSKIATLQGMRVSLVSYNSRARKRPWVVQDLTTPQKYIIDDDTAKRLFGIVETVRDDWIDQI |
Ga0209645_10048235 | F008114 | AGGAG | MNLTINTKAFPDADPGMLQEMLGVLPYWVREYNILGTDMDIVEFMTERYGFGSLYQFKGDVQEDGTYSYPEDPDLPYVGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD |
⦗Top⦘ |