NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1004823

Scaffold Ga0209645_1004823


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1004823 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5945
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008114Metagenome339Y
F037990Metagenome167N
F100996Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10048231F100996AGGAGMKELNEYQKLDWISFAIQEALNGNIGELEQALALVEDLRDNPWIQTHL
Ga0209645_10048232F037990AGGAGMKFDNPTARKIRDAMQEALDKANVNGVTIEVGNCTYSGGEATYKVQVLLDGAKSKEEQDLEQMAHLMGLDTSKIATLQGMRVSLVSYNSRARKRPWVVQDLTTPQKYIIDDDTAKRLFGIVETVRDDWIDQI
Ga0209645_10048235F008114AGGAGMNLTINTKAFPDADPGMLQEMLGVLPYWVREYNILGTDMDIVEFMTERYGFGSLYQFKGDVQEDGTYSYPEDPDLPYVGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD
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