NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1005381

Scaffold Ga0209645_1005381


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1005381 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5574
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F025034Metagenome203Y
F040581Metagenome / Metatranscriptome161N
F045994Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10053811F045994N/AMAELLTDEIIIEHLNDNYGYMEEPDGPFILQLIEEEYGGKLDNTSDWVDNRYTLKIYSESTADSYDIYWCTHDEKPYVGQDGYYYEDYANWSSQAIDELTSGCDVW
Ga0209645_10053814F040581N/AMEFLENGNFNGIKFLGNRRVYNGYLNKEQSWKEYQTWAKENIY
Ga0209645_10053817F025034N/AMDSRKAYEIMKEEYVDREALELCNQIEKQLERIISYDDGFLDNKTFEEIKESAIKLLKEWHL
Ga0209645_10053819F008424N/AMNYRNIIRLKIDNIINMNKNINIYERLFYLTIIAGVCFYCGVFFTFYKIDQRTWNEDILKARDIETRYLNYPIKRNYKKDDLERIIYGK

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