NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1007199

Scaffold Ga0209645_1007199


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1007199 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4681
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003770Metagenome469Y
F021862Metagenome217Y
F064453Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100719912F064453AGGAMIYTDEEHAWLTKPKKKYKKSNKNPERKVETTEWDCQGGHWFVNPTRAWGIKTTIEVDGKEYVVPVQL
Ga0209645_10071993F021862GGAGGMFKRLRRLWELWKQSLFDSYEPKPTVYKVGNKRYIKKKILNRPKGQKGPYLK
Ga0209645_10071995F003770N/AMFKMFAIVCAVTVFECNTMYEDPPRTFETKEQCIEAAVAKEKSTRDMLTDEDGYLTVEHLEVGCERVENI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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