NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1007288

Scaffold Ga0209645_1007288


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1007288 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4645
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100728810F031892N/AMNTDKFNALVHELDSYAQETMNKKGPEYTMQDKDVLNNFKSTAKKLGIDPLIVWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFKERDNI
Ga0209645_10072885F024093N/AMAAIKQLHIVASEIADDIIKDIYKQCDWQIGQFLPDNSEGNEINEAHSYMMRTVARHIANKLDVTTNKYYDE
Ga0209645_10072888F066695N/AMAELLTDDIIYEALEADGIMQEPDANWLLEYINTEYGGELDKDSSWSDNKHELKIYSESTADSYDIYWCTYDEKPYVSQDGYQYEDYPAWSEQAIEALCDGQKVWIESHIWDDMEYEFNHALEQWWTDIYEDIFCADKKDELLDSEDYYEDEK
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