Basic Information | |
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Taxon OID | 3300025151 Open in IMG/M |
Scaffold ID | Ga0209645_1018000 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2725 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000379 | Metagenome / Metatranscriptome | 1211 | Y |
F005266 | Metagenome / Metatranscriptome | 406 | Y |
F015349 | Metagenome / Metatranscriptome | 255 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209645_10180003 | F005266 | AGGCGG | MAVHIRYRFLKEKGDYLKDENMTRGYTMVETDIVHPYYQVLKEFYKDFKGRGVQIFNIWRTPAGQANYKFEEEERRNSV |
Ga0209645_10180006 | F000379 | AGGAG | MQKIDYKNKHGIMVGYIDRSDNVVAVETSWKIKPEDMAKILLEKYPTKEDAIKAVDSPALVPSFRKDDYWYVDGFGDVIESNISWHKEVMRKNVGHLFLFMKGTWQYSDNGIDWEPATELLKEVA |
Ga0209645_10180007 | F015349 | N/A | EEHHASSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEMDKLKIRYTNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVNCGDKLD |
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