NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1021403

Scaffold Ga0209645_1021403


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1021403 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F021207Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_102140311F008925AGGAGMTVKSKPKIDAVTLNLINKLKQIDDTINEGAWEYIHLGDILRLQDAFHTAINHYDLKKKGGIEEHGINEGKYTQFWHSDYVCHTDPEAFDPSKVEEEDDE
Ga0209645_10214034F021207GGAGMSKRFKQVNVQHFATLVQEIDVSKYTQEEYREIVEELYMSIFRHNTDGDFVIPTMPNEEGTWKVHKSSATKEEVMKLIKEGRVTWNKDVI
Ga0209645_10214037F013187AGGAGGMPTKAKIKKKPKITWGWIYGDECLELWEHFGFPHPDPDDRMKLKFVKYESKGSYDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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