NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1030897

Scaffold Ga0209645_1030897


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1030897 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007531Metagenome / Metatranscriptome349Y
F015099Metagenome / Metatranscriptome257N
F040642Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10308971F007531AGGAGMQRIQRLILDFTKDTGLTERREMVHGTLYVKLHEEKECDHFHKVIRTFYKEQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDKGIWSEFAEEEMFNNMPDEVDTLLNLEAESLKGK
Ga0209645_10308972F040642AGGMNRASWIIREIYKDSKKNIKWVLKGVGFMLAMIFIVKVFIYFDIKEFFLPIMAVLIPIGMLYHWYSMSYDDEQKKIIKKLKGDK
Ga0209645_10308974F015099AGGAGMAHTSKNWQVIYRHKDSLAGCFVWAPDEAQAEKKFKARKEFEYDPNFDRDVEEGNIRSIYEYVAPKPKASRSKMDELEAFVKFPQFYPFLKKYDAGDEKALAKQIPLTPDNIAIIDGIAKVIPITRRYRGPRTRGGFMRECHKQDAERVSIYAR
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