Scaffold Ga0209645_1101423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1101423

Scaffold Ga0209645_1101423

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1101423 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	932
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F032639	Metagenome / Metatranscriptome	179	Y
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_11014232	F084107	N/A	MITEDLNLQDLTLEISNSFNDTGAYKELMTTLSTRTDILTPQEVDELVDRLEAFVTQEIQEIIDER
Ga0209645_11014233	F009699	N/A	MMTDKEAQAFMQKVDSSAPFWQELHDEDAPTMQIQGSTVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQGDAGQE
Ga0209645_11014234	F032639	N/A	MLDKNKKLINEDGFYAGSELMWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTITYMIDEGQLKTDEQ

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