NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1101483

Scaffold Ga0209645_1101483


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1101483 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010318Metagenome / Metatranscriptome305Y
F051564Metagenome144Y
F052274Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_11014832F051564GGAGGMSIPKQMIREWCETYDEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNE
Ga0209645_11014833F003976AGGAGGMSRVYNDYYFEKQDILDTLEKLDMSVRFLNAWIREPLGLENAKYVLEKNANQEFKWFSRDMVKELLEEEAQXMLITINQDT
Ga0209645_11014834F010318AGGAGGMNVDNDKPRYIECIYEAPITFDLKELGIDWDDVKDYWVKHGILYVDFKNGDTESYWDNTIGETDYKWAVKESILTESWDLVEGLNXXTEHYTKN
Ga0209645_11014835F052274GGAGGMNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVD
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