Basic Information | |
---|---|
Taxon OID | 3300025151 Open in IMG/M |
Scaffold ID | Ga0209645_1101483 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 932 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F010318 | Metagenome / Metatranscriptome | 305 | Y |
F051564 | Metagenome | 144 | Y |
F052274 | Metagenome / Metatranscriptome | 143 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209645_11014832 | F051564 | GGAGG | MSIPKQMIREWCETYDEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNE |
Ga0209645_11014833 | F003976 | AGGAGG | MSRVYNDYYFEKQDILDTLEKLDMSVRFLNAWIREPLGLENAKYVLEKNANQEFKWFSRDMVKELLEEEAQXMLITINQDT |
Ga0209645_11014834 | F010318 | AGGAGG | MNVDNDKPRYIECIYEAPITFDLKELGIDWDDVKDYWVKHGILYVDFKNGDTESYWDNTIGETDYKWAVKESILTESWDLVEGLNXXTEHYTKN |
Ga0209645_11014835 | F052274 | GGAGG | MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVD |
⦗Top⦘ |