Scaffold Ga0209834_10097751

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209834_10097751

Scaffold Ga0209834_10097751

Overview

Basic Information
Taxon OID	3300025156 Open in IMG/M
Scaffold ID	Ga0209834_10097751 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1198
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078733	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209834_100977513	F078733	N/A	MFGGTAGLGCNHNYKFVRVFFWGKIMSALTHKFGLELDLTSADARQPDHKSGIAEKLRRKNGVIYAEFSKEHPDIVVIEFDPLVTTPDEIYKKIRRLNGEIKRKIFM

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