Scaffold Ga0209619_10005765

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209619_10005765

Scaffold Ga0209619_10005765

Overview

Basic Information
Taxon OID	3300025159 Open in IMG/M
Scaffold ID	Ga0209619_10005765 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8683
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020515	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209619_100057655	F020515	GAG	MTAVAITEKDMRQCEAVCPKHGIQCRLKMFEQEAYPMHGHSVDGKMCVWKK

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