Scaffold Ga0208567_101217

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208567_101217

Scaffold Ga0208567_101217

Overview

Basic Information
Taxon OID	3300025166 Open in IMG/M
Scaffold ID	Ga0208567_101217 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Atlantic Ocean - MMD0.2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1083
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Balearic Sea, Spain
Coordinates	Lat. (^o)	40.83194	Long. (^o)	2.44806	Alt. (m)		Depth (m)	1500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013190	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208567_1012171	F013190	N/A	LENSSMRTPNFMSLSQLYFSNAELGQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSDVLVLAENSNLIK

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