Scaffold Ga0209337

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1000458 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025168 Open in IMG/M

Scaffold ID

Ga0209337_1000458 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32944
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (52.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

32944

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (52.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F070556	Metagenome / Metatranscriptome	123	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092746	Metagenome	107	Y
F092748	Metagenome	107	Y
F094425	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100045811	F056918	GAG	MKQLKVGDVVIAVFLGSPEPCEVIAITNKKEKLYKLRMNSGTILPGVTWLKNLDAKQKKTKPWHILKYVKHVKPKVQKDDKIKRSDLDQAIDEQRKFIRGEIKE
Ga0209337_100045818	F077815	N/A	MQGTDLKNRLKQIIREEVHSCLKEASYKFGTLADPKDMDPNDPMVKVTGFASLNRSSVRNQIVDRLSGALATAKDAAKGGESSYQAYKQLQDLISDAGILYKLIGAELDVANALEATRLKGGRRTIPIPKQ
Ga0209337_100045819	F074050	N/A	MKRSYITKLVKEEIHSLKNEASSKAIKRGTVTDNARLAMILTSLGKRAKGSFQKRKVVSQVIMQLATALEITPNEVLRAYIDYKRDAKGDASTKVKKDD
Ga0209337_100045827	F053550	AGG	MREEIKKARLKKKVMDNYPNATVEYTNTGVQIMSGDIYIAEEFYLPVTMDVETAWEYAAIACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK
Ga0209337_100045829	F092748	N/A	MKVTKPYSSLNQVAAINEKKVEHLGKNYATIDFEIKDQVNPTDFKYAKMKPVVGTFVIGNKRVEVTYSELNHILRTAAAAAEQCDMAYRIGKWGRAQKR
Ga0209337_100045830	F070556	N/A	MGFHKRYINDDQVIELYRTQGNQAVIDLYTKGVDAVITQGDLSEHVLDMLEIGLLTEVDKWNKISELISDASIEKGFE
Ga0209337_100045835	F092746	AGGAG	MSDIKNPQQVKRQLDEADNMLSILQNVIHRGLKIEPQEAQERFSKIRSKIKYAMDSISG
Ga0209337_10004587	F094425	N/A	MKKKSEIKYGIEITKPHSKDMYSHNDMVAKEMKFNIRDAWANEVIKFNANDEWPTEGKIVDIQKGVCAVGYGEGYTIEEVQNDFLQELDNMANWQLHEEYSYMSFKNSLVPRTRFMMVGFDWEKHDYSFCTDIDISPIARMEEQVNNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209337_1000458

Overview

Ecosystem & Geography

Associated Families

Sequences