NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000851

Scaffold Ga0209337_1000851


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000851 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24129
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (27.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045198Metagenome / Metatranscriptome153Y
F045797Metagenome / Metatranscriptome152Y
F068236Metagenome / Metatranscriptome125Y
F091012Metagenome108Y
F098234Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100085110F068236AGGAMLETTGKNRKFTHDQVIEVAGEYLKCKETGQWVSERDVENYEVEMLNIEIQQYYEQEQDKYY
Ga0209337_100085117F045198N/AMKLKAEHIEQIASYMADSLEDHLDGVFWDGVARVLDEFDIDYEDIGDISDEDCEAIVQETRLIFAPKNDSL
Ga0209337_100085119F098234N/AMDKVQLENRVKELTVLIEESSNNVKNLVEEQNSFTKRLDDLNKPKLSPAKFDELQHIVESACEVFELEVNDCEYELELDYDNRIQINHFDWSRCQEDLTQHIMDRMESVFAVTEDEE
Ga0209337_100085120F091012N/AMENLWKRLKPAVKKQILAEEEQYPYMVKEIKSHLEGNLFWNDLPVGAVKQVINFSHNSLLDASMNDFMWGEKFIKKA
Ga0209337_10008519F045797N/AMNILKTVKEDSSIYLETEFAGNKVYTKWRAYKIGELPKNFGCLEYETDVEGVNEWFNYKGYTYVRDNR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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