NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000920

Scaffold Ga0209337_1000920


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000920 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23173
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (72.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F003561Metagenome479Y
F023718Metagenome / Metatranscriptome209Y
F028526Metagenome / Metatranscriptome191Y
F028833Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100092034F028526GAGMEDYLGGIKTKPELFLKLTKRISRPEYTMNFMEDRNGRKAMFYNYKGPEFNEGDCVLLKATIAEHRLDKYERGKPLTYLNRVTVLENRGTI
Ga0209337_100092035F028833AGGAMFNVDKIAEKVANEPMEDVQEEDVPQHVIDENRADLIRERRKELAQMEMYDDPYMNWSGN
Ga0209337_100092042F001048GGAMLFKKMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK
Ga0209337_100092043F023718AGGAGMIEEIDLSLNRSLEELVNSYFEAENEGIESSAFYALEDYLSGMDAI
Ga0209337_10009206F003561N/AMKKKNGNNDNIVDLDLFRREKFTLNVHVGGYYANLEMRVYLHIVGITSPMHTKNAECHFIAEDHFGNLVTFRTDDPPPEFVPSSMEEFSAAAMQMPDPESPLVS
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Institute for Fundamental Biomedical Research
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