NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1001216

Scaffold Ga0209337_1001216


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1001216 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19860
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y
F055730Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100121611F003361AGGMKLTLNGALDLSRSINSQSIWNKRSNDFFNKLALELKDDSLNALDRSPSPRSQAGRGNKNTGNTRRSVFTAKLGNTNRLRMSEGFKLASSSPTSPFIHGKPIFRGFSPVKRTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK
Ga0209337_100121619F055730AGGMSVPFDSNVDLTVEIAFNSNPLDASQTFTDVSTYLRRFTITRGRATNLSNFNPASVTVVLDNSDNRFSPNQTTHYYDATNNRSKIQPLKRIRIKAAYGGSTYTLFHGFVESFPVNYPAQGSDSEAKLKCVDAFKLFNNATLNGFGWQLGISKLGTTTRLTLTQAQELSSVRAKNILDSFGYTNQAISTGQLQVQVQPETDTVLAALRAIELAENGTFFIAANGNATFRDRNYRLTNTTTPEANFGQGGGELNYVDIKSSYDDDKIINTVQRTRTSGATQIAVSADSVDRFGSNVLVQSGTLNIQDSDVLSIAEQITVANDIPQTQIEALSFAPRENVNLWAKALGLDLGSFVEASVTTTASTTETYELFIERIKHTVDARNKTWNWQIGLSPAETGAWILGVAKLGIDTNISYT
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