NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1002115

Scaffold Ga0209337_1002115


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1002115 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14608
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026406Metagenome198N
F044200Metagenome155Y
F076604Metagenome118Y
F087907Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100211510F076604N/AMSEVTPCCGSSYEDSWISDCCTMEMYADSDICPACKKNADATGYICNECGNWTEDLEELSEYNARNKENHYEEMADAKRKYGE
Ga0209337_100211515F044200N/AMSALPFNLNTTTTGRAKGERVEYITTGAHECKITGLSTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKPSTQEWKSKQIKDFLVNAGIKDFNDDSKAMNDAIGNSLMITFISEEYIGVNRDNQEPVIRTATKYRWSAKSGGKCTYNNDMNQTLTNDQMSEFSEKHAMWSKSNTIAQTAASDEDMPF
Ga0209337_100211520F026406N/AMKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYILISTNTVNQEQIDAVEKATTNAEFSEKTPSQRMRGVMYKLWEKTQPKTLNGDSGEMEYVEFDLFYKRQMNKIIDHFKTKLD
Ga0209337_100211528F087907AGGLFDKPTPRYNIPIWLSSWIFKDSKNKIYQLENYIVKGHNKGSIFTNKVIVNKAVNKLIGSRSKKKLVPVNLTLISQHGYGVDDN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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