NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1003485

Scaffold Ga0209337_1003485


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1003485 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11132
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035492Metagenome172N
F048573Metagenome148Y
F071659Metagenome122Y
F077816Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100348511F071659GAGMKIKEWIKIEESMTDLMGWDDGINSMCEAHREVAPKKPIYELSKREDKKIIFRLRKRYSQYRGKSDI
Ga0209337_100348513F035492AGGAGMADVGTILDSAKSQDSWYDPRQDFSGIMPEGEYKAHVKSLNIKRNVKVKNKFLSDIYEVVFTVAEENVDMEYLDDKGNDVTGAAFVGRDFRSKGVFRFKKPNKKEYPNLSENMGSNRSYMELINSFGLTMEEVDGKFFLPELDSSDIEGLPVVAKVYHEKWTTRDGEDKTTAKASMIFSWEDGVKKEDELPF
Ga0209337_100348517F077816GGAGGMKKAKKKAVFVGIADKIQIKSKKYVMSMLYKRAKKNPFMADKSYEEYLDYIKAQVKLLEGIEIKADNEEELYNALKRLGWLKEISVLAIYIITANYGIA
Ga0209337_10034856F048573GGAGMPKMRRCPTCGSRLKHEDYTKRIEKKRMSRDKITLESIDDMFENTSFYFEVADLDKYSFLSDVEDIQDIVIRKMIRQYIHEKYYKRGYGIKYLIGMIKNENSAYGLKKEYERKSLDRIPPKID
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