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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025168 Open in IMG/M |
| Scaffold ID | Ga0209337_1003819 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10553 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016619 | Metagenome / Metatranscriptome | 246 | Y |
| F034394 | Metagenome | 175 | Y |
| F042629 | Metagenome | 158 | Y |
| F053638 | Metagenome | 141 | Y |
| F087902 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209337_100381911 | F034394 | N/A | MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIYQLDGSQGDKIEIWKGESDSWENIVGQDQWYHGEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDSEIPLDIADAVIKMASIEIMNTSFRMDEIPSGGSVSPSESKRYWQDDIDLCISNRREVFVVP |
| Ga0209337_100381912 | F087902 | N/A | MSYTNHNVKDVSSDGAVKAGHGVIVSVHVVKAGASGDKVVFHNGDASSDPAEFTVYGEGIQNIQDIMRRFEDGIYAEVTGTGAKYLVVFK |
| Ga0209337_100381913 | F016619 | N/A | MAITIAHNADHKSLTGKTLSIQSELTSKLKTTVVDVTYGGSDNYATNGNTVDLSLGSRINTVIGASIIHCNKGLLLQYAPAANGAAATGKIKAYGHTPTSSTATVVALEELDNADTAVNSMTVRIRVIGF |
| Ga0209337_10038197 | F053638 | N/A | MALIPIKITYKDKEEIVEFEDSLSFGQTEKLINDSVDLSDVTKPKIDLAKYRMNLLVMTIKKAPFKTGDITTLNMMNGNIVRGILREIVKIHPLTTYIEDWMETFISSEALKSSDMQSTTTVPASSDGTKKK |
| Ga0209337_10038199 | F042629 | GGAG | MTITTYDAVDDIISLIKTKWANLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGENIEYFGLGGTAFWHEQVLELDIRTYQDIDRHNNVVKEIVKIIKDNIVGTTYTDLRVTGSYSRNFQYRNMFSYVLHLSYRKSDPV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |