NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1005443

Scaffold Ga0209337_1005443


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1005443 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8682
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028833Metagenome / Metatranscriptome190Y
F032811Metagenome179Y
F051205Metagenome / Metatranscriptome144Y
F092216Metagenome107Y
F101337Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100544313F032811GAGMRVAPGCYFEQEEEEPIDPIRGRKTSANIKEPTYRRRSTLEDIPDNYSERIMRMNGTARSVPEREVRTPEGFAVTIAYNKSGYQVIPKEDLKN
Ga0209337_100544318F028833GGGGGMETERRLRGKITYMWSDGVIDNIARKVAEEPMEDVPQHVIDEERGDMLRQMRKEQAQMEMYDDPYLNWSGHR
Ga0209337_100544321F092216N/AMKKKYDRFDLEEEIMKVWQTEDDLDAVVHRMMEDPDPIPNKEIANLLISVSKIHDLRCQKLFDIFEKMVIDNCFVYKGTSLDYRGVPLDEDNRQATLWEDEVTIEEF
Ga0209337_10054435F101337AGGMLEILIFGLVVFAVICLWVLIEQRKSPKFLIWFIPLFLVLVTSTYLTYTSILGFPKEGIPSKGLYLKHHIDEPDWVYIWVLGKNNIPMGYKLVYTRAIHNSLIGVEGKANKGKFMVLGEDEEMVEEFDGEPGEKGYGGFTVGGDISFYEWDYSSAMPPKNITN
Ga0209337_10054436F051205GAGMLLLIFVMIATWIVVGCGTSTTGCYGHWVKGPGQHRGTRALLKDAHLPYYQCVDENNKGTNLEERSYL
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