Basic Information | |
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Taxon OID | 3300025168 Open in IMG/M |
Scaffold ID | Ga0209337_1005443 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8682 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F028833 | Metagenome / Metatranscriptome | 190 | Y |
F032811 | Metagenome | 179 | Y |
F051205 | Metagenome / Metatranscriptome | 144 | Y |
F092216 | Metagenome | 107 | Y |
F101337 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209337_100544313 | F032811 | GAG | MRVAPGCYFEQEEEEPIDPIRGRKTSANIKEPTYRRRSTLEDIPDNYSERIMRMNGTARSVPEREVRTPEGFAVTIAYNKSGYQVIPKEDLKN |
Ga0209337_100544318 | F028833 | GGGGG | METERRLRGKITYMWSDGVIDNIARKVAEEPMEDVPQHVIDEERGDMLRQMRKEQAQMEMYDDPYLNWSGHR |
Ga0209337_100544321 | F092216 | N/A | MKKKYDRFDLEEEIMKVWQTEDDLDAVVHRMMEDPDPIPNKEIANLLISVSKIHDLRCQKLFDIFEKMVIDNCFVYKGTSLDYRGVPLDEDNRQATLWEDEVTIEEF |
Ga0209337_10054435 | F101337 | AGG | MLEILIFGLVVFAVICLWVLIEQRKSPKFLIWFIPLFLVLVTSTYLTYTSILGFPKEGIPSKGLYLKHHIDEPDWVYIWVLGKNNIPMGYKLVYTRAIHNSLIGVEGKANKGKFMVLGEDEEMVEEFDGEPGEKGYGGFTVGGDISFYEWDYSSAMPPKNITN |
Ga0209337_10054436 | F051205 | GAG | MLLLIFVMIATWIVVGCGTSTTGCYGHWVKGPGQHRGTRALLKDAHLPYYQCVDENNKGTNLEERSYL |
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