NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1009261

Scaffold Ga0209337_1009261


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1009261 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6333
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004880Metagenome / Metatranscriptome420Y
F086311Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10092611F086311AGGAMANGTEITIQSEDVGTIIKGTAKSRSGNTDTIIDLNDTTSIVINLRDPDGNLTNHTATAVNANGGTDGIWKFTTSSAIFSRNPGIWYIQAKYSLANNTVFYSNIKTLSVGEVL
Ga0209337_10092615F004880GGAGMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYIHLKKGTCDSCGSTMTNRSESEKILIKCGCGKEVELKW

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