NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1009766

Scaffold Ga0209337_1009766


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1009766 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6123
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F017755Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10097662F017755GGAGMAKRGAIIDIGRHKAVGSSWRSMDSMAYSRSYEPETRPDFRVYVTGQADAMLEQYKKDVDKAEALAILDSMM
Ga0209337_10097664F007621AGGAMQNSISKSLVVVNNTLEAEGFALAKEYKSITRGDKARFTKATKADGFDTRLGKLMQKLKAEGGERISSDRLKDCGINGIDKRRRSEALWFVENETACRDFIQASKKGFTSLTALQAAMKPKAAPKPKADTETPVEPEADDKSNVGLDSEADKVDKSPSDIALDALVQCEMNGIAIKDFMIALKEQLEMLDEDKVAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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