Scaffold Ga0209337_1014092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209337_1014092

Scaffold Ga0209337_1014092

Overview

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1014092 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4892
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025856	Metagenome	200	Y
F043622	Metagenome	156	N
F075342	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101409210	F043622	AGGA	MRNKETDMTLEKRIETAIAENTDPFTTDADIRFFETEEWNDEVTLGTKIIGDFGGYEPLWEGKVVAVECFNVGPAEKEVKVEWDNGSTTWMCASEIDAWTKKSKIGYYTEEGYYG
Ga0209337_10140923	F025856	GAGG	MKKINEDQYAFITKDGYDHPAVVMLEGEYKDVAWGYTSVSIPEKIKHQDKAALKWEFEILDNAGREWDEFKNQSFVDLMGDILSDQIDEQLKDGRLQFND
Ga0209337_10140925	F075342	N/A	MGSMDEDEWIHHRMTALWYKWYIHLREEGGYTIATALVAGWWNASVNEAYWTEGPKKWVDNRPKRPYRG

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