NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1019289

Scaffold Ga0209337_1019289


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1019289 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4013
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F020445Metagenome / Metatranscriptome224N
F026438Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_101928910F026438N/AMTNHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDDVIKSELIQTKIDQYEPNDEKDKKKFEFIVKAAKETAQNHLDNIAELDNQDWQDEIEQVLWTPPVNTYWLMYIDLVGKDIFGDLKNKFGTATLTKTKGWTYTNVKCPDRPFYSDVQQISLYQKSLGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDFSDIKKKSFWWTGVAQEQINRLLKHYEXYGNYKTLERKSKRFRKY
Ga0209337_10192897F020445AGGAMSDYDNSAALWKRQPRDADVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEDAPF
Ga0209337_10192899F006892AGGMSDMGIIKPLRERVRDLENINEEHRKKNGQLRQEIQDKDKIIKELTEKINNPTKRMREQGEIXKKEL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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