NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1021476

Scaffold Ga0209337_1021476


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1021476 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3750
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015659Metagenome253Y
F016879Metagenome244Y
F020445Metagenome / Metatranscriptome224N
F026438Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10214761F026438N/AKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDDVIKSELIQTKIDEYEPNDEKDKKKFEFIVKTAKETAQNHLDNIDDLGQYEWSDEQERVLWTPPVNTYWLMYIDLIGKLAKAKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKIPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQENCEDLKQENLDKALKELMIYEIAWEKKLKLADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYG
Ga0209337_10214763F015659GGAMKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTNSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMTDFLKPQKKETLKPIVKLVPKDKPKLSIEQMANDWIEVLKKTAQHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKK
Ga0209337_10214764F020445AGGAMSEYDNSAALWKRQARDTDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEGQPF
Ga0209337_10214767F016879AGTAGMSVIKESFFEASFKTIEEFDNAEVAAASNVSNNAELKIMDIKLDKSLIKTNKEESNDGKEQQSIEKI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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