NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1023996

Scaffold Ga0209337_1023996


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1023996 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3493
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Arenimonas → unclassified Arenimonas → Arenimonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033250Metagenome178N
F038464Metagenome166N
F075427Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10239963F075427GAGGMCLRIDRLWRQEPGWFLSLERSVQVQLLAEHRLLTETPEQAKKHAQRAKRAEFDRRMRRING
Ga0209337_10239964F038464GAGGMKTITLSPLPDLQIRKPASWTALADLTVSWPTEPEDPTFRSRLLRCSAAAIGLVLDDERLPLPSYRTASMDLVAYGESVIEVLIPRGVQLGEIIRGGRTVADWLTTTLPTEQEVSETADFIGAEASVI
Ga0209337_10239966F033250AGGAGGMDIDLSTRRELSPIFEAGGQLDLEVLRPVLEQHAAAMIEDARTGWPVDTGISKAAWQAEIEVSSTELFVSLINEARQRGRGYSVYIHEPRSPRLVYTHVQESLTMNLIPALQADIAVTIYESMRG

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