Scaffold Ga0209337_1023996

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209337_1023996

Scaffold Ga0209337_1023996

Overview

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1023996 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3493
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Arenimonas → unclassified Arenimonas → Arenimonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N
F075427	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10239963	F075427	GAGG	MCLRIDRLWRQEPGWFLSLERSVQVQLLAEHRLLTETPEQAKKHAQRAKRAEFDRRMRRING
Ga0209337_10239964	F038464	GAGG	MKTITLSPLPDLQIRKPASWTALADLTVSWPTEPEDPTFRSRLLRCSAAAIGLVLDDERLPLPSYRTASMDLVAYGESVIEVLIPRGVQLGEIIRGGRTVADWLTTTLPTEQEVSETADFIGAEASVI
Ga0209337_10239966	F033250	AGGAGG	MDIDLSTRRELSPIFEAGGQLDLEVLRPVLEQHAAAMIEDARTGWPVDTGISKAAWQAEIEVSSTELFVSLINEARQRGRGYSVYIHEPRSPRLVYTHVQESLTMNLIPALQADIAVTIYESMRG

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