NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1037160

Scaffold Ga0209337_1037160


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1037160 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2639
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005611Metagenome395Y
F006282Metagenome / Metatranscriptome377Y
F060421Metagenome133Y
F079324Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_103716014F060421N/AMDLCKMFNIFYEHYKKRDGAIYKDLAYYNHKDRIKLLNDFIFHCMDSTERITKDKKLYKQYKGLIGVNKRAIRFYCKLKKFCNKNKKIKGFVQDV
Ga0209337_10371603F079324GAGGMKYNKKMFLEYASAFDYTEDFYYNAKENHGKSITWEQAIKENDEFMKSMNCWNLKDFQEWFDFRKFDIDENEQASEQKG
Ga0209337_10371606F005611GAGGMKKYKVRAEETIYAIYETEIEAETKEQAEKIALDTCISDYLNSDLSNSAGDFTIEEIEEIKE
Ga0209337_10371607F006282AGGGGGMKNNETLKNRLVELSKQNTTLADHLASMCCQADEDTPSEHRTKHFRSTMNDAYEYLEKINYFKRDK
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