NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209324_10492626

Scaffold Ga0209324_10492626


Overview

Basic Information
Taxon OID3300025174 Open in IMG/M
Scaffold IDGa0209324_10492626 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 19ft 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018893Metagenome / Metatranscriptome232N

Sequences

Protein IDFamilyRBSSequence
Ga0209324_104926261F018893N/ATAREVSKGLGEIYPGHREKGFPADKLGEHLANLERLGAVKFNGERWVASDVGVKMVRKYF
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