NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208835_108631

Scaffold Ga0208835_108631


Overview

Basic Information
Taxon OID3300025180 Open in IMG/M
Scaffold IDGa0208835_108631 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Indian Ocean - MP1374 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth of Port of Lincoln, Great Australian Bight, South Indian Ocean
CoordinatesLat. (o)-39.23Long. (o)135.19Alt. (m)Depth (m)3995.55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013190Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0208835_1086311F013190N/ALENSSMRTPNFMSLSQLYFSNAELGQEMSISATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK

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