Scaffold Ga0208700_1003085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208700_1003085

Scaffold Ga0208700_1003085

Overview

Basic Information
Taxon OID	3300025183 Open in IMG/M
Scaffold ID	Ga0208700_1003085 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Pacific Ocean - MP2016 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3058
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	East of Hawaii, North Pacific Ocean
Coordinates	Lat. (^o)	18.04	Long. (^o)	-133.26	Alt. (m)		Depth (m)	4004.03
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002030	Metagenome	601	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208700_10030854	F002030	AGGCGG	MIGLLIFGLVVLSTICLWILIEERKSWKFLIWFIPILLVIVTSTYVTYTSILGFPKVGIPEKGMYLRHYIDEPNWIYLWVLSKNNVPMSYQLVYTREKHNALEGVRGKAEEGNFMILGKDEVLGYGNGGDDHRGSSPGSGYTIGGDISFYKWDFTDNMPPKNTQE

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