NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208700_1004726

Scaffold Ga0208700_1004726


Overview

Basic Information
Taxon OID3300025183 Open in IMG/M
Scaffold IDGa0208700_1004726 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Pacific Ocean - MP2016 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2317
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameEast of Hawaii, North Pacific Ocean
CoordinatesLat. (o)18.04Long. (o)-133.26Alt. (m)Depth (m)4004.03
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089571Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208700_10047262F089571AGGAMVKEKERKMLQNIIVLIISVLFLITPVSSQHVQQKYAITDMDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK
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