NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207913_1011455

Scaffold Ga0207913_1011455


Overview

Basic Information
Taxon OID3300025188 Open in IMG/M
Scaffold IDGa0207913_1011455 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1799
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Santa Cruz de la Palma, Atlantic Ocean
CoordinatesLat. (o)29.97Long. (o)-23.69Alt. (m)Depth (m)4003.49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038275Metagenome / Metatranscriptome166N
F049042Metagenome / Metatranscriptome147Y
F080148Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0207913_10114551F080148N/ASGRGAKNGSGSPATGSAVNFASFTQDSVAYNGVTEWETLKTSCATLGTDCGKRVVEIDARIGVPVYANSTSTGTTPATRGNPPCIRVKTIPTANATNGYIPYGRAIYDNVNLLLGQDVDLLGGIMKDIESLTDLVQLVKNARNKYEIYNGRAKEY
Ga0207913_10114553F038275AGGAGMAHPTGKWAEAEIRRDDIKDLMEKTKKLATMYSELLKIKREGWENVLRAQVKKDAKEKEKQNG
Ga0207913_10114554F049042N/AMAEFQALQTATAEWKPHQIAKAGDIASMAKAAGDLAEVVKETLSLASAGMEVVKLLAQLQNINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIRNVAASPAFTYGFEQLRNPAGDRLWLAKDTQPPPLGTGEFKQTTTTPTQAQLDEQEVIPHLATPR
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