Scaffold Ga0207916_1004781

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207916_1004781

Scaffold Ga0207916_1004781

Overview

Basic Information
Taxon OID	3300025212 Open in IMG/M
Scaffold ID	Ga0207916_1004781 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Indian Ocean - MP1141 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2000
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Indian Ocean
Coordinates	Lat. (^o)	-29.65	Long. (^o)	92.99	Alt. (m)		Depth (m)	2402.15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207916_10047811	F002125	N/A	VIALVGEPSLTSVDLFVSKDTANLMFLRKLPQTIIEVQKVNK

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