Scaffold Ga0208831_1003326

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208831_1003326

Scaffold Ga0208831_1003326

Overview

Basic Information
Taxon OID	3300025222 Open in IMG/M
Scaffold ID	Ga0208831_1003326 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Pacific Ocean - MP2253 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2655
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	West of El Salvador, Pacific Ocean
Coordinates	Lat. (^o)	10.09	Long. (^o)	-99.25	Alt. (m)		Depth (m)	3007.91
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005684	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208831_10033264	F005684	AGGAGG	VFDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRMASTGPGRMHS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.