NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207884_1011017

Scaffold Ga0207884_1011017


Overview

Basic Information
Taxon OID3300025236 Open in IMG/M
Scaffold IDGa0207884_1011017 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1764
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)29.1475Long. (o)-23.6838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025764Metagenome200Y
F062819Metagenome130Y
F064626Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0207884_10110171F025764GGAVEKITSVKDLININHNTASVSYGGLAGMLVATVKWAGKSIREDQTAYALQLLERTTEEIRRVDNVVERYNRRFNN
Ga0207884_10110173F062819N/AMDNYVGIQDVFRIMSYTRLLKLKDELGVKALRDPRTAGELLARKNYERVMTILWKRYEYGIEDAMEDYRRQDHIDEIATIKRP
Ga0207884_10110177F064626AGGAMKELRKVTEKIKKVLIEAERSNEEFPWIVDKLSLIKMYDMGLPIHVVLGLIDEFVEDVEERKRIKALEGFDKEHVQKVYDKVNI
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