NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207884_1015833

Scaffold Ga0207884_1015833


Overview

Basic Information
Taxon OID3300025236 Open in IMG/M
Scaffold IDGa0207884_1015833 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)29.1475Long. (o)-23.6838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037944Metagenome / Metatranscriptome167Y
F043620Metagenome / Metatranscriptome156Y
F074035Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0207884_10158331F074035GAGGMTDRGLLIHFKMNRPRDHWREVSCKQIGCVNFANGWKTILPAGDIANIEMIRRSNLGFREEREDGLIVFIFT
Ga0207884_10158333F043620GGAMRFLALTGLAGILAIIGSGLMLGWLYEGPRRLIRIAACYIGFHGRETWGVNPTNQNSEPYCQDCGRFLVKVY
Ga0207884_10158334F037944GGCGGMTRRITNKLNNGLDRDGFTVGVSLDWSHVFLGITGILFAILIFFVGLATGLGVLCDS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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