Basic Information | |
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Taxon OID | 3300025236 Open in IMG/M |
Scaffold ID | Ga0207884_1031849 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 913 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 29.1475 | Long. (o) | -23.6838 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000161 | Metagenome / Metatranscriptome | 1845 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207884_10318492 | F000161 | AGG | MKKFTIEVSHASGPQLATIALDLKIMSNGWAKHGPRILINGSKLQAPNLRVPGSGTKQQATSTKHNMNTFQ |
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