NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208031_1005003

Scaffold Ga0208031_1005003


Overview

Basic Information
Taxon OID3300025237 Open in IMG/M
Scaffold IDGa0208031_1005003 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameOrkney Island (southeast)
CoordinatesLat. (o)-61.27Long. (o)-43.92Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011528Metagenome / Metatranscriptome290Y
F023216Metagenome211N
F101883Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208031_10050031F023216GAGGMRIKLEYIEVQMILSGLDSMHLPTTSHDDIKKKLYRRLERLEADYTGSYADTAIGKKIEAAVDKIEA
Ga0208031_10050032F101883AGGAGMALANTKVLLETVTTPANTRASYEANIKALNEIAKDCASLIIEIKDAAQADGLGEWADADRTTMPSTKAYEAIETNGHSDLTKLEIRGILKFKAWNQKTSTFPRFAWFK
Ga0208031_10050033F011528GGAMDYDLLGRVMSLVLRDDYYCDRTVFNVRNSILSAIEHDKCFIHRVDGEIVGYCTWGFFTRSEIDLDSWSGSDVFARDVFSDGILFFPKFQCRSGRRDVIRFIRDIQRFMWDNYPEVATAEGLRLYPDGSRRDEKWHRKVA
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