NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208830_1017228

Scaffold Ga0208830_1017228


Overview

Basic Information
Taxon OID3300025238 Open in IMG/M
Scaffold IDGa0208830_1017228 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2634 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1542
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameNortheast of Antigua and Barbuda, North Atlantic Ocean
CoordinatesLat. (o)20.0Long. (o)-52.63Alt. (m)Depth (m)4002.69
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045159Metagenome153Y
F080148Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208830_10172281F045159AGGAMAEFQALQTATAEWKPHQIAKAGDIASMAKAAGDLAEVVKETLSLASAGMEVVKLLAQLQNINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIRNVAAYPAFSYGFEQLRNKGGDRLWLAKNDIGYYVET
Ga0208830_10172284F080148N/AVVEIDARIGVPVYANSTSTGTTPATRGNPPCIRVKTIPTANATSGYIPYGRAIYDNVNLLLGQDVDLLGGIMKDIESLTDLVQLVKNARNKYEIYNGRVKEY
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