NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207893_1054763

Scaffold Ga0207893_1054763


Overview

Basic Information
Taxon OID3300025241 Open in IMG/M
Scaffold IDGa0207893_1054763 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)10.0693Long. (o)-99.2557Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y

Sequences

Protein IDFamilyRBSSequence
Ga0207893_10547631F000161N/AMKKFTIEVSHASPAQLATIALDLKIMANGWEKHGPRIMINGQQVKAPSLRLEGSSSKPQATSRKRHKLAMFL

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