NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207880_1004733

Scaffold Ga0207880_1004733


Overview

Basic Information
Taxon OID3300025247 Open in IMG/M
Scaffold IDGa0207880_1004733 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2453
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-5.7497Long. (o)-170.7411Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059356Metagenome134Y
F080507Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0207880_10047331F080507AGGAGLDTKEIRAEAGALLDQAQVAIEQGEMETFQRLANEAQSTMEKADSIDEAASQVRKLRGDFNRPLNSIPVTSNDVAIYDPQDTTARIKGSYKPASWVKGLPAMAQPLWVQDLCGDNVKDE
Ga0207880_10047333F059356N/ASLTVDWAAMRSGLDDREAMTSRVTGLFAGGILTLNEAREQLGLEAMSDGGIRRIPSSVFEVPEGAAASVAIGEAPVEEALAVGVLKAPRPARRAGILRRQLLEDREAETDALTPKIQRHFRGLRNRVDGILGRYMERGGAESKDFPFDADELMDPKEIINLTSILESAMIRMSRKTFDAINENGLAGNLAWSEKLPFVQSVLVQAPIRATMVHRTTNDTIRRAVSMALERGYSIEQLARGVPDDQFPGLRSILTETENRARLIARTEIMRTQNQTSVGFFKEQGFAYVRADDVDGDPNDTYVDPGDPYERTCAERNGQIYTVEQAQDIDDHPNGTLNWQPMPRNYKPEETIA
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Institute for Fundamental Biomedical Research
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