NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207904_1051551

Scaffold Ga0207904_1051551


Overview

Basic Information
Taxon OID3300025248 Open in IMG/M
Scaffold IDGa0207904_1051551 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)11.9811Long. (o)-108.0335Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003481Metagenome484Y
F013233Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0207904_10515511F003481N/AERLKTTEESSAQSIQMSSGDIVRLVIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTAILSSLFRVDGNGK
Ga0207904_10515512F013233GGAMTLFEKICRMVGNRRIPSFRMPAFRLARISFANRHVTTVVLMAIAVSAAAVSVGLYFVVKDVASSTYNWPEPAEYAVTVEGLQTMGTKNQDYPDGTESQTLSIRLADGARISTLRITDTDLGQADLSRALDIRPLTNAVTGATAYLWV
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