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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025251 Open in IMG/M |
| Scaffold ID | Ga0208182_1000651 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20531 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024572 | Metagenome | 205 | Y |
| F025052 | Metagenome | 203 | Y |
| F054926 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208182_10006511 | F054926 | GGA | MILSGAPIAEAVRYFWDEEQPEEVLIACEEVWPMQSEVLSALEQQSGGMPWHQLGDDQRLDVALRKHYNEMAYFLWTTNYTECDGAAKLKADTCRQSIEAKVAGMAGKESPLASFYHDLLQRYEQQGKAN |
| Ga0208182_100065126 | F025052 | GGA | MARSNIPLDFPVPDFARIREESGSVTEKSVRSLYFASLDTRRRVQRIQQERGWHSAAFAAGNFTANSGTWTVASADQKLFQYIKMGQFVTINFFLEDTTTGSGMGNELRIQIPKGLKAIATTFTGPLIIKGSVDTEGYVTTGGTDKLYCYRTDHASWPSSITNNVDIRGMISFQ |
| Ga0208182_10006514 | F024572 | GAG | MTDFRTFLCEKIGFIPFEHQAAWWATTDGYDLTEIEADPQGTDPMMQVRLPDGTLTHRLMMPRPAGRAKVVAELGAYKSGKSAGAGLWAASFAAVPHATVYLVGNEYDMTAPEFDYLLEAICSERGLNQSYASLQNRPKDGRLWLELDNGARFEARSWERSESLKGKEVDAYVYCEAYQLPGIECFTSIAQNLRVRKGYAVFPTTPDRPWVQIFHDHGHDHPDFPDWVCKCGIPATVNPYSFDQAAMDRDQQLLTREQFSIAYLGKLGDYVGRVYNYQRGDRMLSMQDHAPLWKHQEAGPVKENFKLPHDWHIEIGADTGTYCAAVVVGVSPEGQAYLLDELTNYRYVANTPELDQDSSIVRWCDDLRRMAAIWHTRPMAWVDSNSQFKQECLLHGVHLLANKQGREVRTEAARQYFQHDQIYLAPWLTMVPYELESAQWPDKSTAAGKYERYKVNDHALDCVEHVLSRHPRARTGLKAPPLQPPAGTVQWYGSPLRKKKRQGPVDAHLGGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |