NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1001768

Scaffold Ga0208182_1001768


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1001768 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9599
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028514Metagenome191Y
F065679Metagenome127Y
F091867Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10017681F065679N/AGDTMNMTNGEARRVGKYHTGIKTKVGGVRMPVAKYEAVMAVFEKQGMSFSEGMERLVDTQILRTR
Ga0208182_100176815F091867AGGAGMETLTVEFQPDRRLSKNGLRKGHWRTTQPLIKQAREDAYILGLIEAEDGWQTPDRCRVSVKQYWCGKPFDWDGLATLCGPVIDGLVDAGAMPVEDDPSHILEYTMTAERVATRAESRVAVTVTPVSE
Ga0208182_10017689F028514AGAAGGMRLSDVQHTVDLSLEELVDELVAARATLAAQQQAVWYLEKAAIEGMKERGATVVKTDAGEATLRTPVSYDYGKLAQLREITCPGDLVGYTPEREVVKVERERWNMTQGKTLAKLSSQHRAIIEDAKIYGDPQIKFKERKGDR
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