NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1002667

Scaffold Ga0208182_1002667


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1002667 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6983
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F015346Metagenome / Metatranscriptome255Y
F022282Metagenome215Y
F062169Metagenome / Metatranscriptome131N
F081210Metagenome114N
F105878Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_100266710F015346AGGAMNPEYVSYKIGELVSANATKALGVVTRSNYWALDEYLGGETQFVDVLFGAHQSTQYPIEYLAKVK
Ga0208182_100266713F105878GGAGMKVGQIIKINKSGLAQFAPVIRAKLEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVRFESLQNMNFLDMGAVMVFPDQAEVLS
Ga0208182_100266714F006867GAGGMSVAKEIQKRCRIQPGMLVNSNAATEVNVIALVIGLSPSCKFDRDYEDADEHLFYQCEPIDGGQSFVDYVCNMEQIS
Ga0208182_100266715F062169AGGAGMPVQEHIEKILGAVGQGALDAWYDAINEHPQNAMEIHDVVVEHLVENTFMY
Ga0208182_100266716F022282N/AMSNPFRYQLGDLVNFEARRVTEEYIDETMLTGIVIKQRYVFTADNKFKVRTPDGDYWVRCDHLELISKGPKNKT
Ga0208182_100266720F081210AGGMKPGDLVRQAPNIFSDREVAGKKMLVIKVIEGGSHRSETVLTLLEGKERTWHYGELELWRETR
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