NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1002723

Scaffold Ga0208182_1002723


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1002723 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6868
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011854Metagenome286Y
F040055Metagenome / Metatranscriptome162Y
F095598Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10027233F040055GGTGGMTLARQLAKTSVASQYFPFSGGLNIITPALSLEPGECIAADNFEVDIRGRYRRFDGYERDDGTGLPSAIVYYRIPYTLGSAKDSVFDSAYGIAFDLQIPRVGSTVKGETSGAIGQVLVVTVEQIVTAAGAFIDNDAEGYIYFTVTSGTLEDGETIFFLNTDSAFGASFNVEFG
Ga0208182_10027234F011854GGAGMGTPTALRKERSVLTGTSFANNTTGAITAQMVRQFVESGMGGYGTIKSPAGTPASQAVASTATATIDWNADSVGANGPDDTGSVTSTTVGTDADFANDRIRIYDKGFFMVNLGISFAQTGTDTVIWTFRIATQADAGSVVYPGYDCAVQRVVATLENMVSASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0208182_10027237F095598GGTGGMIRVAKTSDIKQIIKVCKEAHQLSVSKDVPLDDKILWKNLQICILSAEHQVNVVDVAGSVEGVFIGVTHQLWYSRKKQSTDLFFYVTDKGRGWGSSLLRAYIRWARMNKGVAEITLGITSGIGDMNRTRQLYERMGAIKIGDSFIFPQGGIDGRNS
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